Leica LAS X 3.7.6

Edit - Crop : Resize : Combine : Shading : Merge : Mosaic Merge : Manual Image Alignment : Projection :  Extend Depth of Filed

Adjust - Sharpness :  Colors : HSL/HSV Colors : Background : Baseline

Lightning - Lightning & Thunder process

Deconvolution 

Noise Reduction - Median  :  Blur

Segmentation - Tresholding : Morphological Filters : Seeding

Dye Separation - Automatic Dye Separation :  Channel Dye Separation

Topological- Toplogical Filter : Topological 3D View : Parallax Correction

Quantifiy - Intenisty  :  Colocalization