IMAGE ANALYSIS SOFTWARE

Image Analysis Software

Laboratory of Imaging Tissue Structure and Function offers the access to commercial and open-source image analysis software. The access is provided internally (within the Institute network) via HIVE data server using remote desktop: Users connect to the HIVE server from their own computers and are able to use server computing power for image analysis.  

Commercial Software

3D Microscopy Image Analysis

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arivis Vision4D

3D Microscopy Image Analysis

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HUYGENS 

Deconvolution

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Leica LAS X

3D Microscopy Image Analysis

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Zeiss Zen Desk

3D Microscopy Image Analysis

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Symphotime 64

Lifetime Analysis

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Open-source Software

FijiJ / ImageJ

Image viewing and analysis, Various plug-ins available

Website

CellProfiler

Workflow-based batch image analysis

Website

ilastik

Interactive segmentation toolkit

Website